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• Avogadro free 3D cross-platform chemical drawing software

Comment: I had some stability issues w v1.0.3 on OS X but found the software very useful overall. The peptide inserter is a very nice feature. No 2D drawing.

• MarvinSketch free*, mostly 2D chemical drawing software; *educational, also commercial version (Win/Unix/Mac)

Comment: very clean 2D drawing software; structure validation is very useful; specialized features like stereochemistry, complexes, radical, isotopes.; free academic and paid version; v5.10 as of 7/2012.

• ChemDoodle 2D drawing software (Win/Unix/Mac) $60 (2012) review

• ACD/ChemSketch (Win/Linux with emulator) freeware & commercial

• Accelrys Draw (Win only) no-fee educational version & commercial

ISIS/Draw no longer available

successor Symyx, already itself superceded by Accelrys Draw

Accelrys Software

• XDrawChem free 2D drawing software (Win/Unix/Mac)

• free Chemistry Development Kit including JChemPaint runs as a browser applet

Comment: simple yet neat little online tool to draw chemical structures

Links

• thorough comparison of chemical drawing software by Tamas Gunda (last updated 2011)
• overview of chemical informatics toolkits by Abhishek Tiwari
• broader comparison of chemical writing, drawing and viewing software by Bob Bruner (last updated 2011)

• Avogadro free 3D cross-platform chemical drawing software

Comment: I had some stability issues w v1.0.3 on OS X but found the software very useful overall. The peptide inserter is a very nice feature. No 2D drawing.

• MarvinSketch free*, mostly 2D chemical drawing software; *educational, also commercial version (Win/Unix/Mac)

Comment: very clean 2D drawing software; structure validation is very useful; specialized features like stereochemistry, complexes, radical, isotopes.; free academic and paid version; v5.10 as of 7/2012.

• ChemDoodle 2D drawing software (Win/Unix/Mac) $60 (2012) review

• ACD/ChemSketch (Win/Linux with emulator) freeware & commercial

• Accelrys Draw (Win only) no-fee educational version & commercial

ISIS/Draw no longer available

successor Symyx, already itself superceded by Accelrys Draw

• XDrawChem free 2D drawing software (Win/Unix/Mac)

• free Chemistry Development Kit including JChemPaint runs as a browser applet

Comment: simple yet neat little online tool to draw chemical structures

Accelrys Draw Software

Links

• thorough comparison of chemical drawing software by Tamas Gunda (last updated 2011)
• overview of chemical informatics toolkits by Abhishek Tiwari
• broader comparison of chemical writing, drawing and viewing software by Bob Bruner (last updated 2011)

Accelrys Draw Symyx